Active sonar is like broadcasting a locator beacon. Any vessel within miles will know you are there and where you are. Most undersea navigation is done using topographic maps combined with gyroscopic p-fix or position fixes. Considering that the seafloor is changing over time, the maps have to be updated and confirmed regularly.
Don't know why this one made the international news. Bumps, accidents, and close calls, are not all that unusual on a submarine. It is just so incredibly easy to forget something or to make a mistake. This is why everything is checked, and double checked, and triple checked.
Knew a submarine Chief Petty Officer. His motto was that everyone on the sub had only one single personal goal, which was to get him killed. Paranoia is a good thing on a sub. It's a dangerous situation.