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You might find this site both interesting and instructive: http://www.nuclearterror.org/blastmaps.htmlIt wouldn't just be the blast itself, though that is devastating enough. Think of the millions of gallons of (now radioactive) water vapor suddenly in the air and at the mercy of the wind.
I think it assumes airburst at 10k feet. Ground burst - on the surface but not underground - as you rightly said, would be a smaller radius of effect, but a larger radius of total destruction.It is still instructive and thought you would enjoy playing around with it! I use it for novels and articles. It is pretty accurate.
... detonating a nuclear gadget, even a modest one, in the hold of a cargo ship sitting in NY harbor would have serious consequences to NYC and the surrounding areas of NJ (in fact, since it looks as if most cargo traffic passes only through the lower NY harbor area, and goes into areas closer to NJ, like Newark, for offloading, the worst of the damage would be in NJ).